Department of Medicine

Polymorphisms/sequence variations

 

Nucleotide Position, Sequence

Location

Detection

Comment

Ref

 

 

 

 

 

 

 

(-276), 76bp dimorphism

5’ untranslated region

*

Slow 0.25, Fast 0.75

(83)

 

(-159), T/C

"

DGGE

T 0.96, C 0.04 ***

(95)

 

67G>A

"

 

Very low; found in deficient family and not in 78 normal alleles

(6)

 

2457T/A

Exon 2; -3V/E

sequencing

4 families

(60)

 

 

"

"

3 families, one also N405K

(95)

 

 

"

"

4 families, 2 also I7N, one also P41L

(98)

 

 

"

"

1 family

(96)

 

 

"

"

1 family with type I deficiency

(11)

New

2523T/C

Exon 2; 20M/T

sequencing

Previously Whitechapel

(20)

New

5469A/G

Exon 3a; 158Y/C

sequencing

4 families, 3 of Danish origin

(7)

 

7596G/A

Exon 4; 295V

sequencing

GTG 0.43**, GTA 0.57

(82)

 

7626G/A

Exon 4; 305Q

Pst I

+ 0.5,-0.5

(33)

 

7987T/C

Intron 4

Nhe I

+0.64,-0.36

(84)

 

9820G/A

Exon 5; R/Q

sequencing

1 family

(102)

 

8136-8153 (ATT)n

Intron 4; Alu 5 tail

sequencing

n = 6,8

(29)

 

9289-9333 (ATT)n

Intron 4; Alu 8 tail

sequencing

Highly polymorphic n = 5-18

(95)

 

9893C/G

Intron 5

Dde I

= +0.83,-0.17

(85)

* can be detected by visualisation of amplified DNA fragments spanning the polymorphism (8, 86)

** based upon sequencing 20 alleles

*** based on analyzing 156 alleles by denaturing gradient gel electrophoresis (DGGE)

+ presence of restriction enzyme cutting site, - absence of restriction enzyme cutting site

 

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