Polymorphisms/sequence variations
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Nucleotide Position, Sequence |
Location |
Detection |
Comment |
Ref |
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(-276), 76bp dimorphism |
5’ untranslated region |
* |
Slow 0.25, Fast 0.75 |
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(-159), T/C |
" |
DGGE |
T 0.96, C 0.04 *** |
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67G>A |
" |
|
Very low; found in deficient family and not in 78 normal alleles |
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2457T/A |
Exon 2; -3V/E |
sequencing |
4 families |
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" |
" |
3 families, one also N405K |
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" |
" |
4 families, 2 also I7N, one also P41L |
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" |
" |
1 family |
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" |
" |
1 family with type I deficiency |
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New |
2523T/C |
Exon 2; 20M/T |
sequencing |
Previously Whitechapel |
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New |
5469A/G |
Exon 3a; 158Y/C |
sequencing |
4 families, 3 of Danish origin |
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7596G/A |
Exon 4; 295V |
sequencing |
GTG 0.43**, GTA 0.57 |
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7626G/A |
Exon 4; 305Q |
Pst I |
+ 0.5,-0.5 |
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7987T/C |
Intron 4 |
Nhe I |
+0.64,-0.36 |
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9820G/A |
Exon 5; R/Q |
sequencing |
1 family |
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8136-8153 (ATT)n |
Intron 4; Alu 5 tail |
sequencing |
n = 6,8 |
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9289-9333 (ATT)n |
Intron 4; Alu 8 tail |
sequencing |
Highly polymorphic n = 5-18 |
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9893C/G |
Intron 5 |
Dde I |
= +0.83,-0.17 |
* can be detected by visualisation of amplified DNA fragments spanning the polymorphism (8, 86)
** based upon sequencing 20 alleles
*** based on analyzing 156 alleles by denaturing gradient gel electrophoresis (DGGE)
+ presence of restriction enzyme cutting site, - absence of restriction enzyme cutting site


