Professor Christl A Donnelly

Publications


Journals

  • Woodroffe R; Donnelly CA. (Dec 2011). Risk of contact between endangered African wild dogs Lycaon pictus and domestic dogs: opportunities for pathogen transmission. J APPL ECOL. 48:1345-1354. DOI.
  • Harris AF; Nimmo D; McKemey AR; Kelly N; Scaife S; Donnelly CA; Beech C; Petrie WD; et alAlphey L. (Nov 2011). Field performance of engineered male mosquitoes. NAT BIOTECHNOL. 29:1034-U109. DOI.
  • Lu DB; Wang TP; Rudge JW; Donnelly CA; Fang GR; Webster JP. (Nov 2011). Genetic diversity of Schistosoma japonicum miracidia from individual rodent hosts. Int J Parasitol. 41:1371-1376. DOI.
  • Johnston WT; Vial F; Gettinby G; Bourne FJ; Clifton-Hadley RS; Cox DR; Crea P; Donnelly CA; et alMcInerney JP; Mitchell AP; Morrison WI; Woodroffe R. (Dec 2011). Herd-level risk factors of bovine tuberculosis in England and Wales after the 2001 foot-and-mouth disease epidemic. Int J Infect Dis. 15:e833-e840. DOI.
  • O'Reilly KM; Chauvin C; Aylward RB; Maher C; Okiror S; Wolff C; Nshmirimana D; Donnelly CA; et alGrassly NC. (2011). A statistical model of the international spread of wild poliovirus in Africa used to predict and prevent outbreaks. PLoS Med. 8:1-10. Author weblink DOI Open Access copy.
  • Simmons GS; McKemey AR; Morrison NI; O'Connell S; Tabashnik BE; Claus J; Fu GL; Tang GL; et alSledge M; Walker AS; Phillips CE; Miller ED; Rose RI; Staten RT; Donnelly CA; Alphey L. (13 Sep 2011). Field Performance of a Genetically Engineered Strain of Pink Bollworm. PLOS ONE. 6. DOI.
  • Karolemeas K; McKinley TJ; Clifton-Hadley RS; Goodchild AV; Mitchell A; Johnston WT; Conlan AJK; Donnelly CA; et alWood JLN. (1 Oct 2011). Recurrence of bovine tuberculosis breakdowns in Great Britain: Risk factors and prediction. PREV VET MED. 102:22-29. DOI.
  • Koukounari A; Toure S; Donnelly CA; Ouedraogo A; Yoda B; Ky C; Kabore M; Bosque-Oliva E; et alBasanez MG; Fenwick A; Webster JP. (12 Jul 2011). Integrated monitoring and evaluation and environmental risk factors for urogenital schistosomiasis and active trachoma in Burkina Faso before preventative chemotherapy using sentinel sites. BMC INFECT DIS. 11. DOI.
  • Koukounari A; Touré S; Donnelly CA; Ouedraogo A; Yoda B; Ky C; Kaboré M; Bosqué-Oliva E; et alBasáñez MG; Fenwick A; Webster JP. (2011). Integrated monitoring and evaluation and environmental risk factors for urogenital schistosomiasis and active trachoma in Burkina Faso before preventative chemotherapy using sentinel sites. BMC Infect Dis. 11:191. DOI.
  • Van Kerkhove MD; Vandemaele KAH; Shinde V; Jaramillo-Gutierrez G; Koukounari A; Donnelly CA; Carlino LO; Owen R; et alPaterson B; Pelletier L; Vachon J; Gonzalez C; Yu HJ; Feng ZJ; Chuang SK; Au A; Buda S; Krause G; Haas W; Bonmarin I; Taniguichi K; Nakajima K; Shobayashi T; Takayama Y; Sunagawa T; Heraud JM; Orelle A; Palacios E; van der Sande MAB; Wielders CCHL; Hunt D; Cutter J; Lee VJ; Thomas J; Santa-Olalla P; Sierra-Moros MJ; Hanshaoworakul W; Ungchusak K; Pebody R; Jain S; Mounts AW; WHO Working Grp Risk Factors Sever. (Jul 2011). Risk Factors for Severe Outcomes following 2009 Influenza A (H1N1) Infection: A Global Pooled Analysis. PLOS MED. 8. DOI.
  • Vial F; Donnelly CA. (23 Feb 2012). Localized reactive badger culling increases risk of bovine tuberculosis in nearby cattle herds. Biol Lett. 8:50-53. DOI.
  • Truscott J; Fraser C; Cauchemez S; Meeyai A; Hinsley W; Donnelly CA; Ghani A; Ferguson N. (7 Feb 2012). Essential epidemiological mechanisms underpinning the transmission dynamics of seasonal influenza. J R Soc Interface. 9:304-312. DOI.
  • Marsh KA; Nyamukapa CA; Donnelly CA; Garcia-Calleja JM; Mushati P; Garnett GP; Mpandaguta E; Grassly NC; et alGregson S. (2011). Monitoring trends in HIV prevalence among young people, aged 15 to 24 years, in Manicaland, Zimbabwe. J Int AIDS Soc. 14:27. DOI.
  • Simwami SP; Khayhan K; Henk DA; Aanensen DM; Boekhout T; Hagen F; Brouwer AE; Harrison TS; et alDonnelly CA; Fisher MC. (Apr 2011). Low diversity Cryptococcus neoformans variety grubii multilocus sequence types from Thailand are consistent with an ancestral African origin. PLoS Pathog. 7:e1001343. DOI Open Access copy.
  • Karolemeas K; McKinley TJ; Clifton-Hadley RS; Goodchild AV; Mitchell A; Johnston WT; Conlan AJK; Donnelly CA; et alWood JLN. (1 Dec 2010). Predicting prolonged bovine tuberculosis breakdowns in Great Britain as an aid to control. PREV VET MED. 97:183-190. DOI.
  • Vial F; Johnston WT; Donnelly CA. (2011). Local cattle and badger populations affect the risk of confirmed tuberculosis in British cattle herds. PLoS One. 6:e18058. DOI.
  • Donnelly CA; Finelli L; Cauchemez S; Olsen SJ; Doshi S; Jackson ML; Kennedy ED; Kamimoto L; et alMarchbanks TL; Morgan OW; Patel M; Swerdlow DL; Ferguson NM; pH1N1 Household Invest Working Grp. (1 Jan 2011). Serial Intervals and the Temporal Distribution of Secondary Infections within Households of 2009 Pandemic Influenza A (H1N1): Implications for Influenza Control Recommendations. CLIN INFECT DIS. 52:S123-S130. DOI.
  • Drake KA; Donnelly CA; Dawkins MS. (Dec 2010). Influence of rearing and lay risk factors on propensity for feather damage in laying hens. Br Poult Sci. 51:725-733. DOI.
  • Hoen AG; Buckeridge DL; Chan EH; Freifeld CC; Keller M; Charland K; Donnelly CA; Brownstein JS. (Sep 2010). Characteristics of US public schools with reported cases of novel influenza A (H1N1). INT J INFECT DIS. 14:E6-E8. DOI.
  • Jenkins HE; Aylward RB; Gasasira A; Donnelly CA; Mwanza M; Corander J; Garnier S; Chauvin C; et alAbanida E; Pate MA; Adu F; Baba M; Grassly NC. (24 Jun 2010). Implications of a circulating vaccine-derived poliovirus in Nigeria. N Engl J Med. 362:2360-2369. DOI.
  • Lau EHY; Hsiung CA; Cowling BJ; Chen CH; Ho LM; Tsang T; Chang CW; Donnelly CA; et alLeung GM. (6 Mar 2010). A comparative epidemiologic analysis of SARS in Hong Kong, Beijing and Taiwan. BMC INFECT DIS. 10. DOI.
  • Lu DB; Wang TP; Rudge JW; Donnelly CA; Fang GR; Webster JP. (Jan 2010). Contrasting reservoirs for Schistosoma japonicum between marshland and hilly regions in Anhui, China--a two-year longitudinal parasitological survey. Parasitology. 137:99-110. DOI.
  • Jenkins HE; Woodroffe R; Donnelly CA. (2010). The duration of the effects of repeated widespread badger culling on cattle tuberculosis following the cessation of culling. PLoS One. 5:e9090. DOI.
  • Hollingsworth TD; Laeyendecker O; Shirreff G; Donnelly CA; Serwadda D; Wawer MJ; Kiwanuka N; Nalugoda F; et alCollinson-Streng A; Ssempijja V; Hanage WP; Quinn TC; Gray RH; Fraser C. (May 2010). HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda. PLoS Pathog. 6:e1000876. DOI Open Access copy.
  • Lu DB; Rudge JW; Wang TP; Donnelly CA; Fang GR; Webster JP. (2010). Transmission of Schistosoma japonicum in marshland and hilly regions of China: parasite population genetic and sibship structure. PLoS Negl Trop Dis. 4:e781. DOI.
  • Koukounari A; Donnelly CA; Sacko M; Keita AD; Landouré A; Dembelé R; Bosqué-Oliva E; Gabrielli AF; et alGouvras A; Traoré M; Fenwick A; Webster JP. (2010). The impact of single versus mixed schistosome species infections on liver, spleen and bladder morbidity within Malian children pre- and post-praziquantel treatment. BMC Infect Dis. 10:227. DOI.
  • Donnelly CA; Hone J. (Mar 2010). Is there an association between levels of bovine tuberculosis in cattle herds and badgers?. Statistical Communications in Infectious Diseases. 2. Publisher weblink DOI.
  • Cauchemez S; Donnelly CA; Reed C; Ghani AC; Fraser C; Kent CK; Finelli L; Ferguson NM. (31 Dec 2009). Household transmission of 2009 pandemic influenza A (H1N1) virus in the United States. N Engl J Med. 361:2619-2627. DOI.
  • Lu DB; Wang TP; Rudge JW; Donnelly CA; Fang GR; Webster JP. (Dec 2009). Evolution in a multi-host parasite: Chronobiological circadian rhythm and population genetics of Schistosoma japonicum cercariae indicates contrasting definitive host reservoirs by habitat. INT J PARASITOL. 39:1581-1588. DOI.
  • Morrison NI; Segura DF; Stainton KC; Fu G; Donnelly CA; Alphey LS. (Nov 2009). Sexual competitiveness of a transgenic sexing strain of the Mediterranean fruit fly, Ceratitis capitata. ENTOMOL EXP APPL. 133:146-153. DOI.
  • Fraser C; Donnelly CA; Cauchemez S; Hanage WP; Van Kerkhove MD; Hollingsworth TD; Griffin J; Baggaley RF; et alJenkins HE; Lyons EJ; Jombart T; Hinsley WR; Grassly NC; Balloux F; Ghani AC; Rambaut A; Ferguson NM. (28 Aug 2009). Influenza: Making Privileged Data Public Response. SCIENCE. 325:1072-1073.
  • Garske T; Legrand J; Donnelly CA; Ward H; Cauchemez S; Fraser C; Ferguson NM; Ghani AC. (14 Jul 2009). Assessing the severity of the novel influenza A/H1N1 pandemic. BRIT MED J. 339. DOI.
  • Fraser C; Donnelly CA; Cauchemez S; Hanage WP; Van Kerkhove MD; Hollingsworth TD; Griffin J; Baggaley RF; et alJenkins HE; Lyons EJ; Jombart T; Hinsley WR; Grassly NC; Balloux F; Ghani AC; Ferguson NM; Rambaut A; Pybus OG; Lopez-Gatell H; Alpuche-Aranda CM; Chapela IB; Zavala EP; Guevara DME; Checchi F; Garcia E; Hugonnet S; Roth C; WHO Rapid Pandemic Assessment Coll. (19 Jun 2009). Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings. SCIENCE. 324:1557-1561. DOI.
  • Gambhir M; Basanez MG; Burton MJ; Solomon AW; Bailey RL; Holland MJ; Blake IM; Donnelly CA; et alJabr I; Mabey DC; Grassly NC. (Jun 2009). The Development of an Age-Structured Model for Trachoma Transmission Dynamics, Pathogenesis and Control. PLOS NEGLECT TROP D. 3. DOI.
  • Woodroffe R; Donnelly CA; Wei G; Cox DR; Bourne FJ; Burke T; Butlin RK; Cheeseman CL; et alGettinby G; Gilks P; Hedges S; Jenkins HE; Johnston WT; McInerney JP; Morrison WI; Pope LC. (Jul 2009). Social group size affects Mycobacterium bovis infection in European badgers (Meles meles). J ANIM ECOL. 78:818-827. DOI.
  • Koukounari A; Webster JP; Donnelly CA; Bray BC; Naples J; Bosompem K; Shiff C. (Mar 2009). Sensitivities and specificities of diagnostic tests and infection prevalence of Schistosoma haematobium estimated from data on adults in villages northwest of Accra, Ghana. Am J Trop Med Hyg. 80:435-441.
  • Bouma A; Claassen I; Natih K; Klinkenberg D; Donnelly CA; Koch G; van Boven M. (Jan 2009). Estimation of Transmission Parameters of H5N1 Avian Influenza Virus in Chickens. PLOS PATHOG. 5. DOI.
  • Woodroffe R; Donnelly CA; Cox DR; Gilks P; Jenkins HE; Johnston WT; Le Fevre AM; Gourne FJ; et alCheeseman CL; Clifton-Hadley RS; Gettinby G; Hewinson RG; McInerney JP; Mitchel AP; Morrison WI; Watkins GH. (Jan 2009). BOVINE TUBERCULOSIS IN CATTLE AND BADGERS IN LOCALIZED CULLING AREAS. J WILDLIFE DIS. 45:128-143.
  • Hone J; Donnelly CA. (Dec 2008). Evaluating evidence of association of bovine tuberculosis in cattle and badgers. J APPL ECOL. 45:1660-1666. DOI.
  • Jenkins HE; Aylward RB; Gasasira A; Donnelly CA; Abanida EA; Koleosho-Adelekan T; Grassly NC. (16 Oct 2008). Effectiveness of immunization against paralytic poliomyelitis in Nigeria. NEW ENGL J MED. 359:1666-U111.
  • Jenkins HE; Morrison WI; Cox DR; Donnelly CA; Johnston WT; Bourne FJ; Clifton-Hadley RS; Gettinby G; et alMcInerney JP; Watkins GH; Woodroffe R. (Oct 2008). The prevalence, distribution and severity of detectable pathological lesions in badgers naturally infected with Mycobacterium bovis. EPIDEMIOL INFECT. 136:1350-1361. DOI.
  • Jenkins HE; Woodroffe R; Donnelly CA. (Sep 2008). The effects of annual widespread badger culls on cattle tuberculosis following the cessation of culling. INT J INFECT DIS. 12:457-465. DOI.
  • Lamberton PHL; Donnelly CA; Webster JP. (Sep 2008). Specificity of the Toxoplasma gondii-altered behaviour to definitive versus non-definitive host predation risk. PARASITOLOGY. 135:1143-1150. DOI.
  • Woodroffe R; Gilks P; Johnston WT; Le Fevre AM; Cox DR; Donnelly CA; Bourne FJ; Cheeseman CL; et alGettinby G; McInerney JP; Morrison WI. (Jan 2008). Effects of culling on badger abundance: implications for tuberculosis control. J ZOOL. 274:28-37. DOI.
  • Alphey N; Coleman PG; Donnelly CA; Alphey L. (Oct 2007). Managing insecticide resistance by mass release of engineered insects. J ECON ENTOMOL. 100:1642-1649.
  • Jenkins HE; Woodroffe R; Donnelly CA; Cox DR; Johnston WT; Bourne FJ; Cheeseman CL; Clifton-Hadley RS; et alGettinby G; Gilks P; Hewinson RG; McInerney JP; Morrison WI. (Oct 2007). Effects of culling on spatial associations of Mycobacterium bovis infections in badgers and cattle. J APPL ECOL. 44:897-908. DOI.
  • Koukounari A; Gabrielli AF; Toure S; Bosque-Oliva E; Zhang Y; Sellin B; Donnelly CA; Fenwick A; et alWebster JP. (1 Sep 2007). Schistosoma haematobium infection and morbidity before and after large-scale administration of praziquantel in Burkina Faso. J Infect Dis. 196:659-669. DOI.
  • Lewis JJ; Donnelly CA; Mare P; Mupambireyi Z; Garnett GP; Gregson S. (Aug 2007). Evaluating the proximate determinants framework for HIV infection in rural Zimbabwe. Sex Transm Infect. 83 Suppl 1:i61-i69. DOI.
  • van Boven M; Koopmans M; Holle MDRV; Meijer A; Klinkenberg D; Donnelly CA; Heesterbeek HJAP. (Jul 2007). Detecting emerging transmissibility of avian influenza virus in human households. PLOS COMPUT BIOL. 3:1394-1402. DOI.
  • Donnelly CA; Wei G; Johnston WT; Cox DR; Woodroffe R; Bourne FJ; Cheeseman CL; Clifton-Hadley RS; et alGettinby G; Gilks P; Jenkins HE; Le Fevre AM; McInerney JP; Morrison WI. (Jul 2007). Impacts of widespread badger culling on cattle tuberculosis: concluding analyses from a large-scale field trial. Int J Infect Dis. 11:300-308. DOI.
  • Jewell NP; Lei XD; Ghani AC; Donnelly CA; Leung GM; Ho LM; Cowling BJ; Hedley AJ. (30 Apr 2007). Non-parametric estimation of the case fatality ratio with competing risks data: An application to Severe Acute Respiratory Syndrome (SARS). STAT MED. 26:1982-1998. DOI.
  • Phuc HK; Andreasen MH; Burton RS; Vass C; Epton MJ; Pape G; Fu G; Condon KC; et alScaife S; Donnelly CA; Coleman PG; White-Cooper H; Alphey L. (2007). Late-acting dominant lethal genetic systems and mosquito control. BMC Biol. 5:11. DOI.
  • Koukounari A; Sacko M; Keita AD; Gabrielli AF; Landouré A; Dembelé R; Clements AC; Whawell S; et alDonnelly CA; Fenwick A; Traoré M; Webster JP. (Dec 2006). Assessment of ultrasound morbidity indicators of schistosomiasis in the context of large-scale programs illustrated with experiences from Malian children. Am J Trop Med Hyg. 75:1042-1052.
  • Febrer K; Jones TA; Donnelly CA; Dawkins MS. (Dec 2006). Forced to crowd or choosing to cluster? Spatial distribution indicates social attraction in broiler chickens. ANIM BEHAV. 72:1291-1300. DOI.
  • Woodroffe R; Donnelly CA; Jenkins HE; Johnston WT; Cox DR; Bourne FJ; Cheeseman CL; Delahay RJ; et alClifton-Hadley RS; Gettinby G; Gilks P; Hewinson RG; McInerney JP; Morrison WI. (3 Oct 2006). Culling and cattle controls influence tuberculosis risk for badgers. P NATL ACAD SCI USA. 103:14713-14717. DOI.
  • Kwong GP; Ghani AC; Rode RA; Bartley LM; Cowling BJ; da Silva B; Donnelly CA; van Sighem AI; et alCameron DW; Danner SA; de Wolf F; Anderson RM. (3 Oct 2006). Comparison of the risks of atherosclerotic events versus death from other causes associated with antiretroviral use. AIDS. 20:1941-1950. DOI.
  • Lopman BA; Barnabas RV; Boerma JT; Chawira G; Gaitskell K; Harrop T; Mason P; Donnelly CA; et alGarnett GP; Nyamukapa C; Gregson S. (Aug 2006). Creating and validating an algorithm to measure AIDS mortality in the adult population using verbal autopsy. PLoS Med. 3:e312. DOI.
  • Koukounari A; Fenwick A; Whawell S; Kabatereine NB; Kazibwe F; Tukahebwa EM; Stothard JR; Donnelly CA; et alWebster JP. (Aug 2006). Morbidity indicators of Schistosoma mansoni: relationship between infection and anemia in Ugandan schoolchildren before and after praziquantel and albendazole chemotherapy. Am J Trop Med Hyg. 75:278-286.
  • Webster JP; Lamberton PHL; Donnelly CA; Torrey EF. (22 Apr 2006). Parasites as causative agents of human affective disorders? The impact of anti-psychotic, mood-stabilizer and anti-parasite medication on Toxoplasma gondii's ability to alter host behaviour. P R SOC B. 273:1023-1030. DOI.
  • Leung GM; Lim WW; Ho LM; Lam TH; Ghani AC; Donnelly CA; Fraser C; Riley S; et alFerguson NM; Anderson RM; Hedley AJ. (Apr 2006). Seroprevalence of IgG antibodies to SARS-coronavirus in asymptomatic or subclinical population groups. EPIDEMIOL INFECT. 134:211-221. DOI.
  • Hagenaars TJ; Donnelly CA; Ferguson NM. (Apr 2006). Epidemiological analysis of data for scrapie in Great Britain. Epidemiol Infect. 134:359-367. DOI.
  • Donnelly CA; Woodroffe R; Cox DR; Bourne FJ; Cheeseman CL; Clifton-Hadley RS; Wei G; Gettinby G; et alGilks P; Jenkins H; Johnston WT; Le Fevre AM; McInerney JP; Morrison WI. (16 Feb 2006). Positive and negative effects of widespread badger culling on tuberculosis in cattle. Nature. 439:843-846. DOI.
  • Woodroffe R; Donnelly CA; Cox DR; Bourne FJ; Cheeseman CL; Delahay RJ; Gettinby G; McInerney JP; et alMorrison WI. (Feb 2006). Effects of culling on badger Meles meles spatial organization: implications for the control of bovine tuberculosis. J APPL ECOL. 43:1-10. DOI.
  • Cauchemez S; Boelle PY; Donnelly CA; Ferguson NM; Thomas G; Leung GM; Hedley AJ; Anderson RM; et alValleron AJ. (Jan 2006). Real-time estimates in early detection of SARS. EMERG INFECT DIS. 12:110-113.
  • Cox DR; Donnelly CA; Bourne FJ; Gettinby G; McInerney JP; Morrison WI; Woodroffe R. (6 Dec 2005). Simple model for tuberculosis in cattle and badgers. Proc Natl Acad Sci U S A. 102:17588-17593. DOI.
  • Woodroffe R; Donnelly CA; Johnston WT; Bourne FJ; Cheeseman CL; Clifton-Hadley RS; Cox DR; Gettinby G; et alHewinson RG; Le Fevre AM; McInerney JP; Morrison WI. (Oct 2005). Spatial association of Mycobacterium bovis infection in cattle and badgers Meles meles. J APPL ECOL. 42:852-862. DOI.
  • Ferguson NM; Donnelly CA; Hooper J; Ghani AC; Fraser C; Bartley LM; Rode RA; Vernazza P; et alLapins D; Mayer SL; Anderson RM. (22 Sep 2005). Adherence to antiretroviral therapy and its impact on clinical outcome in HIV-infected patients. J ROY SOC INTERFACE. 2:349-363. DOI.
  • Ghani AC; Donnelly CA; Cox DR; Griffin JT; Fraser C; Lam TH; Ho LM; Chan WS; et alAnderson RM; Hedley AJ; Leung GM. (1 Sep 2005). Methods for estimating the case fatality ratio for a novel, emerging infectious disease. Am J Epidemiol. 162:479-486. DOI.
  • Lewis JJ; Garnett GP; Nyamukapa CA; Donnelly CA; Mason PR; Gregson S. (Aug 2005). Patterns of uptake of treatment for self reported sexually transmitted infection symptoms in rural Zimbabwe. Sex Transm Infect. 81:326-332. DOI.
  • Jones TA; Donnelly CA; Stamp Dawkins M. (Aug 2005). Environmental and management factors affecting the welfare of chickens on commercial farms in the United Kingdom and Denmark stocked at five densities. Poult Sci. 84:1155-1165.
  • Lewis JJ; Garnett GP; Mhlanga S; Nyamukapa CA; Donnelly CA; Gregson S. (Jun 2005). Beer halls as a focus for HIV prevention activities in rural Zimbabwe. Sex Transm Dis. 32:364-369.
  • Donnelly CA; Bartley LM; Ghani AC; Le Fevre AM; Kwong GP; Cowling BJ; van Sighem AI; de Wolf F; et alRode RA; Anderson RM. (May 2005). Gender difference in HIV-1 RNA viral loads. HIV Med. 6:170-178. DOI.
  • Johnston WT; Gettinby G; Cox DR; Donnelly CA; Bourne J; Clifton-Hadley R; Le Fevre AM; McInerney JP; et alMitchell A; Morrison WI; Woodroffe R. (Mar 2005). Herd-level risk factors associated with tuberculosis breakdowns among cattle herds in England before the 2001 foot-and-mouth disease epidemic. BIOL LETT-UK. 1:53-56. DOI.
  • Woodroffe R; Bourne FJ; Cox DR; Donnelly CA; Gettinby G; McInerney JP; Morrison WI. (Feb 2005). Welfare of badgers (Meles meles) subjected to culling: patterns of trap-related injury. ANIM WELFARE. 14:11-17.
  • Woodroffe R; Bourne FJ; Cheeseman CL; Cox DR; Donnelly CA; Gettinby G; McInerney JP; Morrison WI. (Feb 2005). Welfare of badgers (Meles meles) subjected to culling: development and evaluation of a closed season. ANIM WELFARE. 14:19-25.
  • Leung GM; Hedley AJ; Ho LM; Chau P; Wong IO; Thach TQ; Ghani AC; Donnelly CA; et alFraser C; Riley S; Ferguson NM; Anderson RM; Tsang T; Leung PY; Wong V; Chan JC; Tsui E; Lo SV; Lam TH. (2 Nov 2004). The epidemiology of severe acute respiratory syndrome in the 2003 Hong Kong epidemic: an analysis of all 1755 patients. Ann Intern Med. 141:662-673.
  • Donnelly CA; Fisher MC; Fraser C; Ghani AC; Riley S; Ferguson NM; Anderson RM. (Nov 2004). Epidemiological and genetic analysis of severe acute respiratory syndrome. Lancet Infect Dis. 4:672-683. DOI.
  • Leung GM; Chung PH; Tsang T; Lim W; Chan SK; Chau P; Donnelly CA; Ghani AC; et alFraser C; Riley S; Ferguson NM; Anderson RM; Law YL; Mok T; Ng T; Fu A; Leung PY; Peiris JS; Lam TH; Hedley AJ. (Sep 2004). SARS-CoV antibody prevalence in all Hong Kong patient contacts. Emerg Infect Dis. 10:1653-1656.
  • Hagenaars TJ; Donnelly CA; Ferguson NM. (7 Aug 2004). Spatial heterogeneity and the persistence of infectious diseases. J Theor Biol. 229:349-359. DOI.
  • Anderson RM; Fraser C; Ghani AC; Donnelly CA; Riley S; Ferguson NM; Leung GM; Lam TH; et alHedley AJ. (29 Jul 2004). Epidemiology, transmission dynamics and control of SARS: the 2002-2003 epidemic. Philos Trans R Soc Lond B Biol Sci. 359:1091-1105. DOI.
  • Ferguson NM; Fraser C; Donnelly CA; Ghani AC; Anderson RM. (14 May 2004). Public health risk from the avian H5N1 influenza epidemic. SCIENCE. 304:968-969.
  • Donnelly CA. (5 Feb 2004). Bovine spongiform encephalopathy in the United States - An epidemiologist's view. NEW ENGL J MED. 350:539-542.
  • Dawkins MS; Donnelly CA; Jones TA. (22 Jan 2004). Chicken welfare is influenced more by housing conditions than by stocking density. Nature. 427:342-344. DOI.
  • Morrison WI; Bourne FJ; Cox DR; Donnelly CA; Gettinby G; McInerney PJ; Woodroffe R. (2004). Potential use of vaccination in cattle or badgers to control bovine tuberculosis. Dev Biol (Basel). 119:351-359.
  • Riley S; Donnelly CA; Ferguson NM. (21 Dec 2003). Robust parameter estimation techniques for stochastic within-host macroparasite models. J Theor Biol. 225:419-430.
  • Donnelly CA; Woodroffe R; Cox DR; Bourne J; Gettinby G; Le Fevre AM; McInerney JP; Morrison WI. (18 Dec 2003). Impact of localized badger culling on tuberculosis incidence in British cattle. NATURE. 426:834-837. DOI.
  • Harney MS; Ghani AC; Donnelly CA; Walsh RM; Walsh M; Howley R; Brett F; Farrell M. (26 Nov 2003). vCJD risk in the Republic of Ireland. BMC Infect Dis. 3:28. DOI.
  • Hagenaars TJ; Donnelly CA; Ferguson NM; Anderson RM. (Oct 2003). Dynamics of a scrapie outbreak in a flock of Romanov sheep--estimation of transmission parameters. Epidemiol Infect. 131:1015-1022.
  • Ferguson NM; Donnelly CA. (7 Aug 2003). Assessment of the risk posed by bovine spongiform encephalopathy in cattle in Great Britain and the impact of potential changes to current control measures. Proc Biol Sci. 270:1579-1584. DOI.
  • Riley S; Fraser C; Donnelly CA; Ghani AC; Abu-Raddad LJ; Hedley AJ; Leung GM; Ho LM; et alLam TH; Thach TQ; Chau P; Chan KP; Leung PY; Tsang T; Ho W; Lee KH; Lau EMC; Ferguson NM; Anderson RM. (20 Jun 2003). Transmission dynamics of the etiological agent of SARS in Hong Kong: Impact of public health interventions. SCIENCE. 300:1961-1966. DOI.
  • Ghani AC; Ferguson NM; Donnelly CA; Anderson RM. (Jun 2003). Short-term projections for variant Creutzfeldt-Jakob disease onsets. Stat Methods Med Res. 12:191-201.
  • Donnelly CA; Ghani AC; Leung GM; Hedley AJ; Fraser C; Riley S; Abu-Raddad LJ; Ho LM; et alThach TQ; Chau P; Chan KP; Lam TH; Tse LY; Tsang T; Liu SH; Kong JH; Lau EM; Ferguson NM; Anderson RM. (24 May 2003). Epidemiological determinants of spread of causal agent of severe acute respiratory syndrome in Hong Kong. Lancet. 361:1761-1766. DOI.
  • Ghani AC; Donnelly CA; Ferguson NM; Anderson RM. (27 Apr 2003). Updated projections of future vCJD deaths in the UK. BMC Infect Dis. 3:4.
  • Ghani AC; Ferguson NM; Donnelly CA; Anderson RM. (7 Apr 2003). Factors determining the pattern of the variant Creutzfeldt-Jakob disease (vCJD) epidemic in the UK. Proc Biol Sci. 270:689-698. DOI.
  • Ghani AC; Donnelly CA; Anderson RM. (Jan 2003). Patterns of antiretroviral use in the United States of America: analysis of three observational databases. HIV Med. 4:24-32.
  • Donnelly CA; Ferguson NM; Ghani AC; Anderson RM. (Jun 2003). Extending backcalculation to analyse BSE data. Stat Methods Med Res. 12:177-190.
  • Bartley LM; Donnelly CA; Anderson RM. (30 Nov 2002). Review of foot-and-mouth disease virus survival in animal excretions and on fomites. Vet Rec. 151:667-669.
  • Donnelly CA; Ferguson NM; Ghani AC; Anderson RM. (7 Nov 2002). Implications of BSE infection screening data for the scale of the British BSE epidemic and current European infection levels. Proc Biol Sci. 269:2179-2190. DOI.
  • Howard SC; Donnelly CA; Kabatereine NB; Ratard RC; Brooker S. (Aug 2002). Spatial and intensity-dependent variations in associations between multiple species helminth infections. Acta Trop. 83:141-149.
  • Bartley LM; Donnelly CA; Garnett GP. (Jul 2002). The seasonal pattern of dengue in endemic areas: mathematical models of mechanisms. T ROY SOC TROP MED H. 96:387-397.
  • Donnelly CA. (Jul 2002). BSE in France: epidemiological analysis and predictions. C R Biol. 325:793-806.
  • Ghani AC; Ferguson NM; Fraser C; Donnelly CA; Danner S; Reiss P; Lange J; Goudsmit J; et alAnderson RM; De Wolf F. (1 Jun 2002). Viral replication under combination antiretroviral therapy: a comparison of four different regimens. J Acquir Immune Defic Syndr. 30:167-176.
  • Hails RS; Hernandez-Crespo P; Sait SM; Donnelly CA; Green BM; Cory JS. (Apr 2002). Transmission patterns of natural and recombinant baculoviruses. ECOLOGY. 83:906-916.
  • Ghani AC; Henley WE; Donnelly CA; Mayer S; Anderson RM. (25 Jan 2002). Response to comments on the comparison of the effectiveness of non-nucleoside reverse transcriptase inhibitor and protease inhibitor-containing regimens using observational databases. AIDS. 16:302-303.
  • Ferguson NM; Ghani AC; Donnelly CA; Hagenaars TJ; Anderson RM. (24 Jan 2002). Estimating the human health risk from possible BSE infection of the British sheep flock. Nature. 415:420-424. DOI.
  • Ghani AC; Donnelly CA; Ferguson NM; Anderson RM. (Jan 2002). The transmission dynamics of BSE and vCJD. C R Biol. 325:37-47.
  • Ghani AC; de Wolf F; Ferguson NM; Donnelly CA; Coutinho R; Miedema F; Goudsmit J; Anderson RM. (1 Nov 2001). Surrogate markers for disease progression in treated HIV infection. J Acquir Immune Defic Syndr. 28:226-231.
  • Ferguson NM; Donnelly CA; Anderson RM. (4 Oct 2001). Transmission intensity and impact of control policies on the foot and mouth epidemic in Great Britain. Nature. 413:542-548. DOI.
  • Anderson RM; Ferguson NM; Donnelly CA. (6 Sep 2001). Group did give timely foot-and-mouth analysis. Nature. 413:16. DOI.
  • Hagenaars TJ; Ferguson NM; Donnelly CA; Anderson RM. (Aug 2001). Persistence patterns of scrapie in a sheep flock. Epidemiol Infect. 127:157-167.
  • Ghani AC; Henley WE; Donnelly CA; Mayer S; Anderson RM. (15 Jun 2001). Comparison of the effectiveness of non-nucleoside reverse transcriptase inhibitor-containing and protease inhibitor-containing regimens using observational databases. AIDS. 15:1133-1142.
  • Ferguson NM; Donnelly CA; Anderson RM. (11 May 2001). The foot-and-mouth epidemic in Great Britain: pattern of spread and impact of interventions. Science. 292:1155-1160. DOI.
  • Donnelly CA; Cox DR. (Apr 2001). Mathematical biology and medical statistics: contributions to the understanding of AIDS epidemiology. Stat Methods Med Res. 10:141-154.
  • Donnelly CA. (Apr 2001). The impact of the AIDS epidemic on medical statistics. Stat Methods Med Res. 10:83-84.
  • Howard SC; Donnell CA; Chan MS. (Feb 2001). Methods for estimation of associations between multiple species parasite infections. Parasitology. 122:233-251.
  • Donnelly CA. (14 Dec 2000). Likely size of the French BSE epidemic. Nature. 408:787-788. DOI.
  • Hagenaars TJ; Donnelly CA; Ferguson NM; Anderson RM. (Dec 2000). The transmission dynamics of the aetiological agent of scrapie in a sheep flock. MATH BIOSCI. 168:117-135.
  • Howard SC; Donnelly CA. (Oct 2000). The importance of immediate destruction in epidemics of foot and mouth disease. Res Vet Sci. 69:189-196. DOI.
  • Tuyttens FAM; Delahay RJ; MacDonald DW; Cheeseman CL; Long B; Donnelly CA. (Sep 2000). Spatial perturbation caused by a badger (Meles meles) culling operation: implications for the function of territoriality and the control of bovine tuberculosis (Mycobacterium bovis). J ANIM ECOL. 69:815-828.
  • Bruce MC; Donnelly CA; Packer M; Lagog M; Gibson N; Narara A; Walliker D; Alpers MP; et alDay KP. (Sep 2000). Age- and species-specific duration of infection in asymptomatic malaria infections in Papua New Guinea. Parasitology. 121 ( Pt 3):247-256.
  • Bruce MC; Galinski MR; Barnwell JW; Donnelly CA; Walmsley M; Alpers MP; Walliker D; Day KP. (Sep 2000). Genetic diversity and dynamics of plasmodium falciparum and P. vivax populations in multiply infected children with asymptomatic malaria infections in Papua New Guinea. Parasitology. 121 ( Pt 3):257-272.
  • Ghani AC; Ferguson NM; Donnelly CA; Anderson RM. (10 Aug 2000). Predicted vCJD mortality in Great Britain. Nature. 406:583-584. DOI.
  • Howard SC; Omumbo J; Nevill C; Some ES; Donnelly CA; Snow RW. (Jul 2000). Evidence for a mass community effect of insecticide-treated bednets on the incidence of malaria on the Kenyan coast. Trans R Soc Trop Med Hyg. 94:357-360.
  • Anderson TJ; Paul RE; Donnelly CA; Day KP. (Jun 2000). Do malaria parasites mate non-randomly in the mosquito midgut?. Genet Res. 75:285-296.
  • Snow RW; Howard SC; Mung'ala-Odera V; English M; Molyneux CS; Waruiru C; Mwangi I; Roberts DJ; et alDonnelly CA; Marsh K. (May 2000). Paediatric survival and re-admission risks following hospitalization on the Kenyan Coast. TROP MED INT HEALTH. 5:377-383.
  • Thomas DD; Donnelly CA; Wood RJ; Alphey LS. (31 Mar 2000). Insect population control using a dominant, repressible, lethal genetic system. Science. 287:2474-2476.
  • Hagenaars TJ; Ferguson NM; Donnelly CA; Ghani AC; Anderson RM. (7 Feb 2000). Feed-borne transmission and case clustering of BSE. Proc Biol Sci. 267:205-215. DOI.
  • Bruce MC; Donnelly CA; Alpers MP; Galinski MR; Barnwell JW; Walliker D; Day KP. (4 Feb 2000). Cross-species interactions between malaria parasites in humans. Science. 287:845-848.
  • Ghani AC; Donnelly CA; Ferguson NM; Anderson RM. (7 Jan 2000). Assessment of the prevalence of vCJD through testing tonsils and appendices for abnormal prion protein. Proc Biol Sci. 267:23-29. DOI.
  • Howard SC; Donnelly CA. (2000). Estimation of a time-varying force of infection and basic reproduction number with application to an outbreak of classical swine fever. J Epidemiol Biostat. 5:161-168.
  • Brooker S; Donnelly CA; Guyatt HL. (2000). Estimating the number of helminthic infections in the Republic of Cameroon from data on infection prevalence in schoolchildren. Bull World Health Organ. 78:1456-1465.
  • Ferguson NM; deWolf F; Ghani AC; Fraser C; Donnelly CA; Reiss P; Lange JM; Danner SA; et alGarnett GP; Goudsmit J; Anderson RM. (21 Dec 1999). Antigen-driven CD4+ T cell and HIV-1 dynamics: residual viral replication under highly active antiretroviral therapy. Proc Natl Acad Sci U S A. 96:15167-15172.
  • Tuyttens FAM; Macdonald DW; Delahay R; Rogers LM; Mallinson RJ; Donnelly CA; Newman C. (Dec 1999). Differences in trappability of European badgers Meles meles in three populations in England. J APPL ECOL. 36:1051-1062.
  • Ferguson NM; Donnelly CA; Anderson RM. (29 Apr 1999). Transmission dynamics and epidemiology of dengue: insights from age-stratified sero-prevalence surveys. Philos Trans R Soc Lond B Biol Sci. 354:757-768. DOI.
  • Gupta S; Snow RW; Donnelly CA; Marsh K; Newbold C. (Mar 1999). Immunity to non-cerebral severe malaria is acquired after one or two infections. Nat Med. 5:340-343. DOI.
  • Guyatt HL; Brooker S; Donnelly CA. (Mar 1999). Can prevalence of infection in school-aged children be used as an index for assessing community prevalence?. Parasitology. 118 ( Pt 3):257-268.
  • Ferguson NM; Donnelly CA; Woolhouse ME; Anderson RM. (7 Jan 1999). Estimation of the basic reproduction number of BSE: the intensity of transmission in British cattle. Proc Biol Sci. 266:23-32. DOI.
  • Donnelly CA; Santos R; Ramos M; Galo A; Simas JP. (1999). BSE in Portugal: anticipating the decline of an epidemic. J Epidemiol Biostat. 4:277-283.
  • Raab GM; Donnelly CA. (1999). Information on sexual behaviour when some data are missing. J ROY STAT SOC C-APP. 48:117-133.
  • Ghani AC; Ferguson NM; Donnelly CA; Hagenaars TJ; Anderson RM. (22 Dec 1998). Epidemiological determinants of the pattern and magnitude of the vCJD epidemic in Great Britain. Proc Biol Sci. 265:2443-2452. DOI.
  • Ghani AC; Ferguson NM; Donnelly CA; Hagenaars TJ; Anderson RM. (24 Oct 1998). Estimation of the number of people incubating variant CJD. LANCET. 352:1353-1354.
  • Gregson S; Machekano R; Donnelly CA; Mbizvo MT; Anderson RM; Katzenstein DA. (22 Oct 1998). Estimating HIV incidence from age-specific prevalence data: comparison with concurrent cohort estimates in a study of male factory workers, Harare, Zimbabwe. AIDS. 12:2049-2058.
  • Ghani AC; Donnelly CA; Garnett GP. (30 Sep 1998). Sampling biases and missing data in explorations of sexual partner networks for the spread of sexually transmitted diseases. Stat Med. 17:2079-2097.
  • Donnelly CA. (23 May 1998). Maternal transmission of BSE: interpretation of the data on the offspring of BSE-affected pedigree suckler cows. Vet Rec. 142:579-580.
  • Ferguson NM; Ghani AC; Donnelly CA; Denny GO; Anderson RM. (7 Apr 1998). BSE in Northern Ireland: epidemiological patterns past, present and future. Proc Biol Sci. 265:545-554. DOI.
  • Snow RW; Nahlen B; Palmer A; Donnelly CA; Gupta S; Marsh K. (Mar 1998). Risk of severe malaria among African infants: Direct evidence of clinical protection during early infancy. J INFECT DIS. 177:819-822.
  • Ye XP; Donnelly CA; Anderson RM; Fu YL; Agnew A. (Mar 1998). The distribution of Schistosoma japonicum eggs in faeces and the effect of stirring faecal specimens. Ann Trop Med Parasitol. 92:181-185.
  • Krebs JR; Anderson RM; Clutton-Brock T; Donnelly CA; Frost S; Morrison WI; Woodroffe R; Young D. (6 Feb 1998). Policy: Biomedicine - Badgers and bovine TB: Conflicts between conservation and health. SCIENCE. 279:817-818.
  • Donnelly CA; Ferguson NM; Ghani AC; Wilesmith JW; Anderson RM. (22 Nov 1997). Analysis of dam-calf pairs of BSE cases: confirmation of a maternal risk enhancement. Proc Biol Sci. 264:1647-1656. DOI.
  • Anderson RM; Donnelly CA; Gupta S. (15 Nov 1997). Vaccine design, evaluation, and community-based use for antigenically variable infectious agents. Lancet. 350:1466-1470. DOI.
  • Donnelly CA; Ghani AC; Ferguson NM; Anderson RM. (30 Oct 1997). Recent trends in the BSE epidemic. NATURE. 389:903-903.
  • Ferguson NM; Donnelly CA; Woolhouse ME; Anderson RM. (22 Oct 1997). A genetic interpretation of heightened risk of BSE in offspring of affected dams. Proc Biol Sci. 264:1445-1455. DOI.
  • Donnelly CA; Ferguson NM; Ghani AC; Woolhouse ME; Watt CJ; Anderson RM. (29 Jul 1997). The epidemiology of BSE in cattle herds in Great Britain. I. Epidemiological processes, demography of cattle and approaches to control by culling. Philos Trans R Soc Lond B Biol Sci. 352:781-801. DOI.
  • Ferguson NM; Donnelly CA; Woolhouse ME; Anderson RM. (29 Jul 1997). The epidemiology of BSE in cattle herds in Great Britain. II. Model construction and analysis of transmission dynamics. Philos Trans R Soc Lond B Biol Sci. 352:803-838. DOI.
  • Ye XP; Donnelly CA; Fu YL; Wu ZX. (Mar 1997). The non-randomness of the distribution of Trichuris trichiura and Ascaris lumbricoides eggs in faeces and the effect of stirring faecal specimens. Trop Med Int Health. 2:261-264.
  • Donnelly CA; Gore SM; Curnow RN; Wilesmith JW. (1997). The bovine spongiform encephalopathy maternal cohort study: Its purpose and findings. APPL STAT-J ROY ST C. 46:299-304.
  • Donnelly CA; Seth J; Clayton RM; Phillips CI; Cuthbert J. (1997). Some plasma constituents correlate with human cataract location and nuclear colour. Ophthalmic Res. 29:207-217.
  • Donnelly CA; Ghani AC; Ferguson NM; Wilesmith JW; Anderson RM. (1997). Analysis of the bovine spongiform encephalopathy maternal cohort study: Evidence for direct maternal transmission. APPL STAT-J ROY ST C. 46:321-344.
  • Gregson S; Donnelly CA; Parker CG; Anderson RM. (Dec 1996). Demographic approaches to the estimation of incidence of HIV-1 infection among adults from age-specific prevalence data in stable endemic conditions. AIDS. 10:1689-1697.
  • Anderson RM; Donnelly CA; Ferguson NM; Woolhouse ME; Watt CJ; Udy HJ; MaWhinney S; Dunstan SP; et alSouthwood TR; Wilesmith JW; Ryan JB; Hoinville LJ; Hillerton JE; Austin AR; Wells GA. (29 Aug 1996). Transmission dynamics and epidemiology of BSE in British cattle. Nature. 382:779-788. DOI.
  • Phillips CI; Clayton RM; Cuthbert J; Qian W; Donnelly CA; Prescott RJ. (Jul 1996). Human cataract risk factors: Significance of abstention from, and high consumption of, Ethanol (U-curve) and non-significance of smoking. OPHTHALMIC RES. 28:237-247.
  • Phillips CI; Donnelly CA; Clayton RM; Cuthbert J. (Jul 1996). Skin disease and age-related cataract. ACTA DERM-VENEREOL. 76:314-318.
  • DONNELLY CA. (15 Nov 1995). THE SPATIAL-ANALYSIS OF COVARIATES IN A STUDY OF ENVIRONMENTAL EPIDEMIOLOGY. STAT MED. 14:2393-2409.

Chapters in books

  • Woodroffe R; Bourne FJ; Donnelly CA; Cox DR; Gettinby G; McInerney JP; Morrison WI. Towards a sustainable policy to control TB in cattle. In Conservation and Conflict: Mammals and Farming in Britain. 142-151. Tatersall F (ed); Manley W (ed). Linnean Society, London (2003).
  • Donnelly CA; Riley S; Fraser C; Ghani AC; Fisher MC; Ferguson NM; Anderson RM. Epidemiological analysis of SARS: a novel infectious disease. In Challenges of Severe Acute Respiratory Syndrome. 9-30. Chan JCK (ed); Wong VCWT (ed). Elsevier (2006).

Conferences

  • Koukounari A; Gabrielli AF; Toure S; Bosque-Oliva E; Zhang YB; Sellin B; Donnelly CA; Fenwick A; et alWebster JP. Schistosoma haematobium infection and morbidity before and after large-scale administration of praziquantel in Burkina Faso. 11th International Congress of Parasitology (ICOPA XI). 196:659-669. (1 Sep 2007).
  • Hagenaars TJ; Ferguson NM; Donnelly CA; Anderson RM. The transmission dynamics of scrapie: Analyses using mathematical models. 211-218. (2001).
  • Donnelly CA; MaWhinney S; Anderson RM. A review of the BSE epidemic in British cattle. 89th Annual Meeting of the American-Phytopathological-Society. 5:164-173. (Sep 1999).
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