Dr David Aanensen

Publications


Journals

  • Cheng L; Connor TR; Aanensen DM; Spratt BG; Corander J. (26 Jul 2011). Bayesian semi-supervised classification of bacterial samples using MLST databases. BMC BIOINFORMATICS. 12. DOI.
  • Simwami SP; Khayhan K; Henk DA; Aanensen DM; Boekhout T; Hagen F; Brouwer AE; Harrison TS; et alDonnelly CA; Fisher MC. (Apr 2011). Low diversity Cryptococcus neoformans variety grubii multilocus sequence types from Thailand are consistent with an ancestral African origin. PLoS Pathog. 7:e1001343. DOI Open Access copy.
  • Chaloner GL; Harrison TG; Coyne KP; Aanensen DM; Birtles RJ. (Jun 2011). Multilocus sequence typing of Bartonella henselae in the United Kingdom indicates that only a few, uncommon sequence types are associated with zoonotic disease. J Clin Microbiol. 49:2132-2137. DOI.
  • Ogden NH; Margos G; Aanensen DM; Drebot MA; Feil EJ; Hanincová K; Schwartz I; Tyler S; et alLindsay LR. (May 2011). Investigation of genotypes of Borrelia burgdorferi in Ixodes scapularis ticks collected during surveillance in Canada. Appl Environ Microbiol. 77:3244-3254. DOI.
  • Margos G; Hojgaard A; Lane RS; Cornet M; Fingerle V; Rudenko N; Ogden N; Aanensen DM; et alFish D; Piesman J. (2010). Multilocus sequence analysis of Borrelia bissettii strains from North America reveals a new Borrelia species, Borrelia kurtenbachii. TICKS TICK-BORNE DIS. 1:151-158. DOI.
  • Vollmer SA; Bormane A; Dinnis RE; Seelig F; Dobson AD; Aanensen DM; James MC; Donaghy M; et alRandolph SE; Feil EJ; Kurtenbach K; Margos G. (Jan 2011). Host migration impacts on the phylogeography of Lyme Borreliosis spirochaete species in Europe. Environ Microbiol. 13:184-192. DOI.
  • Grundmann H; Aanensen DM; van den Wijngaard CC; Spratt BG; Harmsen D; Friedrich AW; European Staphylococcal Reference Laboratory Working Group. (Jan 2010). Geographic distribution of Staphylococcus aureus causing invasive infections in Europe: a molecular-epidemiological analysis. PLoS Med. 7:e1000215. DOI.
  • Aanensen DM; Huntley DM; Feil EJ; al-Own F; Spratt BG. (16 Sep 2009). EpiCollect: Linking Smartphones to Web Applications for Epidemiology, Ecology and Community Data Collection. PLOS ONE. 4. DOI.
  • Meyer W; Aanensen DM; Boekhout T; Cogliati M; Diaz MR; Esposto MC; Fisher M; Gilgado F; et alHagen F; Kaocharoen S; Litvintseva AP; Mitchell TG; Simwami SP; Trilles L; Viviani MA; Kwon-Chung J. (2009). Consensus multi-locus sequence typing scheme for Cryptococcus neoformans and Cryptococcus gattii. MED MYCOL. 47:561-570. DOI.
  • Hanage WP; Aanensen DM. (2009). Methods for data analysis. Methods Mol Biol. 551:287-304. DOI.
  • Holden MTG; Heather Z; Paillot R; Steward KF; Webb K; Ainslie F; Jourdan T; Bason NC; et alHolroyd NE; Mungall K; Quail MA; Sanders M; Simmonds M; Willey D; Brooks K; Aanensen DM; Spratt BG; Jolley KA; Maiden MCJ; Kehoe M; Chanter N; Bentley SD; Robinson C; Maskell DJ; Parkhill J; Waller AS. (Mar 2009). Genomic Evidence for the Evolution of Streptococcus equi: Host Restriction, Increased Virulence, and Genetic Exchange with Human Pathogens. PLOS PATHOG. 5. DOI.
  • Pryce-Miller E; Aanensen D; Vanittanakom N; Fisher MC. (Feb 2008). Environmental detection of Penicillium marneffei and growth in soil microcosms in competition with Talaromyces stipitatus. FUNGAL ECOL. 1:49-56. DOI Open Access copy.
  • Bishop CJ; Aanensen DM; Jordan GE; Kilian M; Hanage WP; Spratt BG. (26 Jan 2009). Assigning strains to bacterial species via the internet. BMC BIOL. 7. DOI.
  • Margos G; Gatewood AG; Aanensen DM; Hanincova K; Terekhova D; Vollmer SA; Cornet M; Piesman J; et alDonaghy M; Bormane A; Hurn MA; Feil EJ; Fish D; Casjens S; Wormser GP; Schwartz I; Kurtenbach K. (24 Jun 2008). MLST of housekeeping genes captures geographic population structure and suggests a European origin of Borrelia burgdorferi. P NATL ACAD SCI USA. 105:8730-8735. DOI.
  • Abbott JC; Aanensen DM; Bentley SD. (2007). WebACT: an online genome comparison suite. Methods Mol Biol. 395:57-74.
  • Aanensen DM; Mavroldi A; Bentley SD; Reeves PR; Spratt BG. (Nov 2007). Predicted functions and linkage Specificities of the products of the Streptococcus pneumoniae capsular biosynthetic loci. J BACTERIOL. 189:7856-7876. DOI.
  • Mavroidi A; Aanensen DM; Godoy D; Skovsted IC; Kaltoft MS; Reeves PR; Bentley SD; Spratt BG. (Nov 2007). Genetic relatedness of the Streptococcus pneumoniae capsular biosynthetic loci. J Bacteriol. 189:7841-7855. DOI.
  • Bentley SD; Aanensen DM; Mavroidi A; Saunders D; Rabbinowitsch E; Collins M; Donohoe K; Harris D; et alMurphy L; Quail MA; Samuel G; Skovsted IC; Kaltoft MS; Barrell B; Reeves PR; Parkhill J; Spratt BG. (Mar 2006). Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes. PLoS Genet. 2:e31. DOI.
  • Aanensen DM; Spratt BG. (1 Jul 2005). The multilocus sequence typing network: mlst.net. NUCLEIC ACIDS RES. 33:W728-W733. DOI.
  • Feil EJ; Li BC; Aanensen DM; Hanage WP; Spratt BG. (Mar 2004). eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J BACTERIOL. 186:1518-1530. DOI.
  • Godoy D; Randle G; Simpson AJ; Aanensen DM; Pitt TL; Kinoshita R; Spratt BG. (Oct 2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholdefia mallei (vol 41, pg 2068, 2003). J CLIN MICROBIOL. 41:4913-4913. DOI.
  • Bougnoux ME; Aanensen DM; Morand S; Théraud M; Spratt BG; d'Enfert C. (Sep 2004). Multilocus sequence typing of Candida albicans: strategies, data exchange and applications. Infect Genet Evol. 4:243-252. DOI.
  • Godoy D; Randle G; Simpson AJ; Aanensen DM; Pitt TL; Kinoshita R; Spratt BG. (May 2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol. 41:2068-2079.
  • Martin IM; Ison CA; Aanensen DM; Fenton KA; Spratt BG. (15 Apr 2004). Rapid sequence-based identification of gonococcal transmission clusters in a large metropolitan area. J Infect Dis. 189:1497-1505. DOI.
  • Mavroidi A; Godoy D; Aanensen DM; Robinson DA; Hollingshead SK; Spratt BG. (Dec 2004). Evolutionary genetics of the capsular locus of serogroup 6 pneumococci. J Bacteriol. 186:8181-8192. DOI.
  • Spratt BG; Hanage WP; Li B; Aanensen DM; Feil EJ. (15 Dec 2004). Displaying the relatedness among isolates of bacterial species -- the eBURST approach. FEMS Microbiol Lett. 241:129-134. DOI.
  • Abbott JC; Aanensen DM; Rutherford K; Butcher S; Spratt BG. (15 Sep 2005). WebACT--an online companion for the Artemis Comparison Tool. Bioinformatics. 21:3665-3666. DOI.
  • Martin IM; Ison CA; Aanensen DM; Fenton KA; Spratt BG. (1 Oct 2005). Changing epidemiologic profile of quinolone-resistant Neisseria gonorrhoeae in London. J Infect Dis. 192:1191-1195. DOI.
  • Fisher MC; Aanensen D; de Hoog S; Vanittanakom N. (Nov 2004). Multilocus microsatellite typing system for Penicillium marneffei reveals spatially structured populations. J CLIN MICROBIOL. 42:5065-5069. DOI.

Books

  • Abbott JC; Aanensen DM; Bentley SD. Bergman NH (ed). Methods in Molecular Biology - Comparative Genomics - WebACT: An Online Genome Comparison Suite. 1. Humana Press (Jul 2007).
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