Dr Jake G Bundy

Publications


Journals

  • Davies SK; Leroi AM; Bundy JG. (Jan 2012). Fluorodeoxyuridine affects the identification of metabolic responses to daf-2 status in Caenorhabditis elegans. Mech Ageing Dev. 133:46-49. DOI.
  • Tredwell GD; Behrends V; Geier FM; Liebeke M; Bundy JG. (15 Nov 2011). Between-person comparison of metabolite fitting for NMR-based quantitative metabolomics. Anal Chem. 83:8683-8687. DOI.
  • Spurgeon DJ; Lawlor A; Hooper HL; Wadsworth R; Svendsen C; Thomas LD; Ellis JK; Bundy JG; et alKeun HC; Jarup L. (Dec 2011). Outdoor and indoor cadmium distributions near an abandoned smelting works and their relations to human exposure. Environ Pollut. 159:3425-3432. DOI.
  • Casadevall i Solvas X; Geier FM; Leroi AM; Bundy JG; Edel JB; DeMello AJ. (21 Sep 2011). High-throughput age synchronisation of Caenorhabditis elegans. Chem Commun (Camb). 47:9801-9803. DOI.
  • Zeitoun-Ghandour S; Leszczyszyn OI; Blindauer CA; Geier FM; Bundy JG; Stürzenbaum SR. (Aug 2011). C. elegans metallothioneins: response to and defence against ROS toxicity. Mol Biosyst. 7:2397-2406. DOI.
  • Behrends V; Tredwell GD; Bundy JG. (15 Aug 2011). A software complement to AMDIS for processing GC-MS metabolomic data. Anal Biochem. 415:206-208. DOI.
  • Geier FM; Want EJ; Leroi AM; Bundy JG. (15 May 2011). Cross-platform comparison of Caenorhabditis elegans tissue extraction strategies for comprehensive metabolome coverage. Anal Chem. 83:3730-3736. DOI.
  • Behrends V; Bundy JG; Williams HD. (Jun 2011). Differences in strategies to combat osmotic stress in Burkholderia cenocepacia elucidated by NMR-based metabolic profiling. Lett Appl Microbiol. 52:619-625. DOI.
  • Tredwell GD; Edwards-Jones B; Leak DJ; Bundy JG. (2011). The development of metabolomic sampling procedures for Pichia pastoris, and baseline metabolome data. PLoS One. 6:e16286. DOI.
  • Keun HC; Ellis JK; Thomas LDK; Teichert F; Athersuch TJ; Svendsen C; Spurgeon DJ; Singh R; et alJaerup L; Bundy JG. (1 Nov 2010). Metabolomics, human health and the environment: big opportunities for small molecule profiling. MUTAGENESIS. 25:637-638. Author weblink.
  • Williams HD; Behrends V; Bundy JG; Ryall B; Zlosnik JEA. Hypertonic saline therapy in cystic fibrosis: do population shifts caused by the osmotic sensitivity of infecting bacteria explain the effectiveness of this treatment?. Frontiers in Microbiology. 1. Author weblink.
  • Behrends V; Ryall B; Wang X; Bundy JG; Williams HD. (Mar 2010). Metabolic profiling of Pseudomonas aeruginosa demonstrates that the anti-sigma factor MucA modulates osmotic stress tolerance. Mol Biosyst. 6:562-569. DOI.
  • Fuchs S; Bundy JG; Davies SK; Viney JM; Swire JS; Leroi AM. (2010). A metabolic signature of long life in Caenorhabditis elegans. BMC Biol. 8:14. DOI.
  • Hughes SL; Bundy JG; Want EJ; Kille P; Sturzenbaum SR. (1 Jul 2009). The Metabolomic Responses of Caenorhabditis elegans to Cadmium Are Largely Independent of Metallothionein Status, but Dominated by Changes in Cystathionine and Phytochelatins. JOURNAL OF PROTEOME RESEARCH. 8:3512-3519. Author weblink DOI.
  • Swire J; Fuchs S; Bundy JG; Leroi AM. (7 Aug 2009). The cellular geometry of growth drives the amino acid economy of Caenorhabditis elegans. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES. 276:2747-2754. Author weblink DOI.
  • Guo Q; Sidhu JK; Ebbels TMD; Rana F; Spurgeon DJ; Svendsen C; Sturzenbaum SR; Kille P; et alMorgan AJ; Bundy JG. (1 Mar 2009). Validation of metabolomics for toxic mechanism of action screening with the earthworm Lumbricus rubellus. METABOLOMICS. 5:72-83. Author weblink DOI.
  • Bundy JG; Davey MP; Viant MR. (1 Mar 2009). Environmental metabolomics: a critical review and future perspectives. METABOLOMICS. 5:3-21. Author weblink DOI.
  • Behrends V; Ebbels TM; Williams HD; Bundy JG. (Apr 2009). Time-resolved metabolic footprinting for nonlinear modeling of bacterial substrate utilization. Appl Environ Microbiol. 75:2453-2463. DOI.
  • Viant MR; Bearden DW; Bundy JG; Burton IW; Collette TW; Ekman DR; Ezernieks V; Karakach TK; et alLin CY; Rochfort S; De Ropp JS; Teng Q; Tieerdema RS; Walter JA; Wu H. (1 Jan 2009). International NMR-Based Environmental Metabolomics Intercomparison Exercise. ENVIRONMENTAL SCIENCE & TECHNOLOGY. 43:219-225. Author weblink DOI.
  • Saric J; Li JV; Wang Y; Keiser J; Bundy JG; Holmes E; Utzinger J. (1 Jul 2008). Metabolic Profiling of an Echinostoma caproni Infection in the Mouse for Biomarker Discovery. PLOS NEGLECTED TROPICAL DISEASES. 2. Author weblink DOI.
  • Bundy JG; Sidhu JK; Rana F; Spurgeon DJ; Svendsen C; Wren JF; Sturzenbaum SR; Morgan AJ; et alKille P. (3 Jun 2008). 'Systems toxicology' approach identifies coordinated metabolic responses to copper in a terrestrial non-model invertebrate, the earthworm Lumbricus rubellus. BMC BIOLOGY. 6. Author weblink DOI.
  • Overgaard J; Malmendal A; Sorensen JG; Bundy JG; Loeschcke V; Nielsen NC; Holmstrup M. (1 Dec 2007). Metabolomic profiling of rapid cold hardening and cold shock in Drosophila melanogaster. JOURNAL OF INSECT PHYSIOLOGY. 53:1218-1232. Author weblink DOI.
  • Morrison N; Bearden D; Bundy JG; Collette T; Currie F; Davey MP; Haigh NS; Hancock D; et alJones OAH; Rochfort S; Sansone S-A; Stys D; Teng Q; Field D; Viant MR. (1 Sep 2007). Standard reporting requirements for biological samples in metabolomics experiments: environmental context. METABOLOMICS. 3:203-210. DOI.
  • Bundy JG; Papp B; Harmston R; Browne RA; Clayson EM; Burton N; Reece RJ; Oliver SG; et alBrindle KM. (Apr 2007). Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling. Genome Res. 17:510-519. DOI.
  • Bundy, JG; Keun, HC; Sidhu, JK; Spurgeon, DJ; Svendsen, C; Kille, P; Morgan, AJ. (2007). Metabolic profile biomarkers of metal contamination in a sentinel terrestrial species are applicable across multiple sites. Environmental Science & Technology. 12, 41:4458-4464. Author weblink.
  • Beckonert O; Keun HC; Ebbels TMD; Bundy JG; Holmes E; Lindon JC; Nicholson JK. (1 Jan 2007). Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts. NATURE PROTOCOLS. 2:2692-2703. Author weblink DOI.
  • Bundy JG; Iyer NG; Gentile MS; Hu D-E; Kettunen M; Maia A-T; Thorne NP; Brenton JD; et alCaldas C; Brindle KM. (1 Aug 2006). Metabolic consequences of p300 gene deletion in human colon cancer cells. CANCER RESEARCH. 66:7606-7614. Author weblink DOI.
  • Malmendal A; Overgaard J; Bundy JG; Sorensen JG; Nielsen NC; Loeschcke V; Holmstrup M. (1 Jul 2006). Metabolomic profiling of heat stress: hardening and recovery of homeostasis in Drosophila. AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY. 291:R205-R212. Author weblink DOI.
  • Viant MR; Bundy JG; Pincetich CA; de Ropp JS; Tjeerdema RS. (1 Apr 2005). NMR-derived developmental metabolic trajectories: an approach for visualizing the toxic actions of trichloroethylene during embryogenesis. METABOLOMICS. 1:149-158. Author weblink DOI.
  • Zlosnik JEA; Tavankar GR; Bundy JG; Mossialos D; O'Toole R; Williams HD. (1 May 2006). Investigation of the physiological relationship between the cyanide-insensitive oxidase and cyanide production in Pseudomonas aeruginosa. MICROBIOLOGY-SGM. 152:1407-1415. Author weblink DOI.
  • Bundy JG; Willey TL; Castell RS; Ellar DJ; Brindle KM. (1 Jan 2005). Discrimination of pathogenic clinical isolates and laboratory strains of Bacillus cereus by NMR-based metabolomic profiling. FEMS MICROBIOLOGY LETTERS. 242:127-136. Author weblink DOI.
  • Hankard PK; Bundy JG; Spurgeon DJ; Weeks JM; Wright J; Weinberg C; Svendsen C. (1 Jan 2005). Establishing principal soil quality parameters influencing earthworms in urban soils using bioassays. ENVIRONMENTAL POLLUTION. 133:199-211. Author weblink DOI.
  • Bundy JG; Spurgeon DJ; Svendsen C; Hankard PK; Weeks JM; Osborn D; Lindon JC; Nicholson JK. (Nov 2004). Environmental metabonomics: applying combination biomarker analysis in earthworms at a metal contaminated site. Ecotoxicology. 13:797-806.
  • Bundy JG; Paton GI; Campbell CD. (1 Jul 2004). Combined microbial community level and single species biosensor responses to monitor recovery of oil polluted soil. SOIL BIOLOGY & BIOCHEMISTRY. 36:1149-1159. Author weblink DOI.
  • Bundy JG; Ramløv H; Holmstrup M. (Nov 2003). Multivariate metabolic profiling using 1H nuclear magnetic resonance spectroscopy of freeze-tolerant and freeze-intolerant earthworms exposed to frost. Cryo Letters. 24:347-358.
  • Bundy JG; Maciel H; Cronin MT; Paton GI. (Jan 2003). Limitations of a cosolvent for ecotoxicity testing of hydrophobic compounds. Bull Environ Contam Toxicol. 70:1-8. DOI.
  • Bundy JG; Lenz EM; Bailey NJ; Gavaghan CL; Svendsen C; Spurgeon D; Hankard PK; Osborn D; et alWeeks JM; Trauger SA; Speir P; Sanders I; Lindon JC; Nicholson JK; Tang H. (Sep 2002). Metabonomic assessment of toxicity of 4-fluoroaniline, 3,5-difluoroaniline and 2-fluoro-4-methylaniline to the earthworm Eisenia veneta (Rosa): identification of new endogenous biomarkers. Environ Toxicol Chem. 21:1966-1972.
  • Bundy JG; Spurgeon DJ; Svendsen C; Hankard PK; Osborn D; Lindon JC; Nicholson JK. (19 Jun 2002). Earthworm species of the genus Eisenia can be phenotypically differentiated by metabolic profiling. FEBS Lett. 521:115-120.
  • Bundy JG; Lenz EM; Osborn D; Weeks JM; Lindon JC; Nicholson JK. (Jun 2002). Metabolism of 4-fluoroaniline and 4-fluorobiphenyl in the earthworm Eisenia veneta characterized by high-resolution NMR spectroscopy with directly coupled HPLC-NMR and HPLC-MS. Xenobiotica. 32:479-490. DOI.
  • Bundy JG; Paton GI; Campbell CD. (1 Jan 2002). Microbial communities in different soil types do not converge after diesel contamination. JOURNAL OF APPLIED MICROBIOLOGY. 92:276-288. Author weblink DOI.
  • Bundy JG; Campbell CD; Paton GI. (Aug 2001). Comparison of response of six different luminescent bacterial bioassays to bioremediation of five contrasting oils. J Environ Monit. 3:404-410.
  • Bundy JG; Osborn D; Weeks JM; Lindon JC; Nicholson JK. (29 Jun 2001). An NMR-based metabonomic approach to the investigation of coelomic fluid biochemistry in earthworms under toxic stress. FEBS Lett. 500:31-35.
  • Bundy JG; Morriss AWJ; Durham DG; Campbell CD; Paton GI. (1 Mar 2001). Development of QSARs to investigate the bacterial toxicity and biotransformation potential of aromatic heterocylic compounds. CHEMOSPHERE. 42:885-892. Author weblink DOI.
  • Bundy JG; Durham DG; Paton GI; Campbell CD. (1 Jan 2000). Investigating the specificity of regulators of degradation of hydrocarbons and hydrocarbon-based compounds using structure-activity relationships. BIODEGRADATION. 11:37-47. Author weblink DOI.
  • Bundy JG; Wardell JL; Campbell CD; Killham K; Paton GI. (1 Nov 1997). Application of bioluminescence-based microbial biosensors to the ecotoxicity assessment of organotins. LETTERS IN APPLIED MICROBIOLOGY. 25:353-358. Author weblink DOI.

Conferences

  • Bundy JG; Campbell CD; Paton GI. Assessing crude oil bioremediation using catabolic and metabolic microbial biosensors. 5th International In Situ and On-Site Bioremediation Symposium, 19 Apr 1999 - 22 Apr 1999. 351-356. BATTELLE PRESS (1 Jan 1999). Author weblink.
Share this on Delicious
Tweet this
Digg this
Stumble this
Share this on Facebook